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Laboratory Manuals and User Guides

Table of Contents

• Laboratories

Shipboard Laboratories

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Third-party Tools

• IODP third-party tool policy and request documents
• Export control information

Shore-Based Laboratories

• XRF Core Scanning Facility

Legacy Laboratory Information

• JOIDES Resolution Facilities during 1985–2005)

Laboratory Manuals and User Guides

Database

Geochemistry and Microbiology

Analytical Gas Monitor

• Analytical Gas Monitor System User Guide_378P

Alkalinity/pH - Metrohm 794 SM Titrino autotitrator 

• Alkalinity Quick Start Guide
• Alkalinity Quick Start Guide 378P
• Alkalinity User Guide
• Alkalinity User Guide_378P

Balance - Cahn Model 31 Microbalance

• Balances User Guide

Balance - Mettler-Toledo XS204 dual-balance system

• Balances User Guide

Chloride Autotitrator

• Cl-AUTO Quick Start Guide
• Cl Titrator User Guide_378P

CHNS - Thermo Electron Flash EA 1112 Elemental Analzyer

• CHNS Quick Start Guide
• CHNS User Guide
• CHNS Quick Start Guide_378P
• CHNS User Guide_378P
• CHNS Advanced User Guide_378P

Coulometer - Coulometrics CM5011 

• Coulometer Quick Start Guide
• Coulometer Quick Start Guide_378P
• Coulometer User Guide
• Coulometer User Guide_378P

GC_PFT - Agilent 6890 Gas Chromatograph with Micro-Electron Capture Detector (PFT)

• GC2 User Guide
• GC2_PFT User Guide_378P

GC - Agilent 6890 Gas Chromatograph

• GC3-NGA User Guide_378P (Archived)
• GC3-NGA Advanced User Guide_378P (Archived)

IC - Metrohm Ion Chromatograph (Obselete)

• IC Quick Start Guide

IC - Agilent Cary 100 UV-Visible Spectrophotometer (SPEC)

• Cary User Guide
• Cary IC User Guide_378P
• Cary IC QSG_378P

ICP-AES - Teledyne Leeman Prodigy (Obselete)

ICP-OES - Agilent 5110 

• Agilent ICP Quick Start Guide_378P
• Agilent ICP User Guide_378P

MBIO Tracer Pump

• MBIO Tracer Pump User Guide_378P

SRA - Weatherford Instruments Source Rock Analyzer 

• SRA Quick Start Guide
• SRA User Guide
• SRA Quick Start Guide_378P
• SRA User Guide_378P
• SRA Advanced User Guide_378P

TOC - Total Organic Carbon Analyzer

• TOC User Guide (Archived)
• TOC Advanced User Guide (Archived)

XRD - Bruker AXS D4 Endeavor X-Ray Diffractometer 

• XRD Quick Start Guide
• XRD User Guide
• XRD.EVA Quick Start Guide
• XRD User Guide 378P
• XRD Quick Start Guide 378P
• XRD Diffrac.EVA Quick Start Guide 378P
• XRD Diffrac.TOPAS Quick Start Guide 378P
• ICP Hard Rock Sample Preparation 378P
• pXRF User Guide 378P
• pXRF Safety 378P
• pXRF Quick Start Guide 378P

Laboratory Manuals and User Guides

Geology

DESClogik core description application

• DESC Quick Start Guide
• DESC Paleo Quick Start Guide
• DESClogik Frequently Asked Questions_378P
• Value List Builder Macro: User Guide
• DESClogik Quick Start Guide_378P
• DESClogik: Micropaleontology Quick Start Guide

Section Half Imaging Logger (SHIL)

• SHIL Quick Start Guide
• SHIL Quick Start Guide 378P
• SHIL User Guide
• SHIL User Guide 378P
• SHIL QAQC Report 378P

Section Half Multisensor Logger (SHMSL)

• SHMSL Quick Start Guide
• SHMSL Quick Start Guide 378P
• SHMSL User Guide
• SHMSL User Guide 378P

Minolta

• Minolta Manual 

Laboratory Manuals and User Guides

Underway Geophysics

Bathymetry

• Depth Correction_378P

Magnetometer (Maggie)

• Maggie Quick User Guide_378P
• Maggie Cheat Sheet_378P

Navigation

• Winfrog Cookbook_378P
• JRNav Google Earth_378P
• JRData Server_378P
• Site Fix

Laboratory Manuals and User Guides

Stratigraphic Correlation

• Correlator Quick Start Guide
• Correlator Manual
• Correlator User Guide Movies

Laboratory Manuals and User Guides

Microscopy

Sample Preparation

• Thin Section Lab Cook Book 378P
• Fine-Fraction Spray Quick Start Guide
• Fine Fraction Spraying_378P

Sample Imaging

• Image Capture Quick Start Guide
• PICAT Quick Start Guide
• PICAT Quick Start Guide_378P
• PICAT User Guide_378P

Scanning Electron Microscopy (SEM)

• Scanning Electron Microscopy Reference Studies
• SEM Sputter Coat (Scientists) Quick Start Guide
• SEM Sputter Coat Differences User Guide
• SEM: Sputter Coating Quick Start Guide_378P
• SEM: Sputter Coating User Guide_378P
• SEM: File Uploader Quick Start Guide_378P
• SEM: File Uploader User Guide_378P
• SEM: File Uploader Administrator User Guide_378P
• SEM: 3D Imaging Guide_378P

Laboratory Manuals and User Guides

Geophysics and Paleomagnetics

AGICO JR-6A Spinner Magnetometer

• AGICO JR-6A Spinner Magnetometer User Guide 
• JR-6A Quick Start Guide

2G Enterprises 760-4K Superconducting Rock Magnetometer (SRM)

• SRM Discretes Quick Start Guide
• SRM Section Half Quick Start Guide
• SRM User Guide 378P
• SRM Quick Start Guide 378P

D-TECH D-2000 A/F demagnetizer

• D2000 AF Demag Quick Start Guide
• DTech User Guide 378P
• DTech Quick Start Guide 378P

Icefield MI-5 Multishot Orientation Tool

• MI5 CreateInclinFile.exe Quick Start Guide
• MI5 Multishot Orientation Tool Quick Start Guide
• MI5 Multishot Orientation Tool User Guide
• Orientation Tool Flow Chart Instructions

Kappabridge

• Kappabridge User Guide 378P

Moisture and Density (MAD)

• Balances User Guide
• Balances User Guide 378P
• MAD Quick Start Guide
• MAD User Guide
• MAD User Guide 378P
• MAD Quick Start Guide 378P

Natural Gamma Radiation Logger (NGRL)

• NGR Quick Start Guide
• NGR Quick Start Guide 378P
• NGR User Guide Draft v.362T
• NGR User Guide 378P

P-Wave Velocity Bayonet/Caliper Gantry (PWAVE_B/PWAVE_C)

• PWV Quick Start Guide
• PWV Quick Start Guide 378P
• PWV User Guide
• PWV User Guide 378P

Section Half Imaging Logger (SHIL)

• SHIL Quick Start Guide
• SHIL Quick Start Guide 378P
• SHIL User Guide
• SHIL User Guide 378P

Section Half Multisensor Logger (SHMSL)

• SHMSL Quick Start Guide
• SHMSL User Guide
• SHMSL User Guide 378P
• SHMSL Quick Start Guide 378P

Shear Strength Gantry with Automated Vane Shear (AVS)

• Strength Quick Start Guide 378P
• Strength User Guide
• Strength User Guide 378P

Special-Task Multisensor Logger “Fast Track” (STMSL)

• See WRMSL guides

TeKa TK-04 Thermal Conductivity Meter

• TK04 Quick Start Guide
• TK04 Quick Start Guide 378P
• TK04 User Guide
• TK04 User Guide 378P
• TK04 Manufacturer User Guide
• TK04 Report: Comparison of TeKa TK04 and Hukseflux TPSYS02 systems
  • A report by Rob Harris (currently in draft form only)

Whole-Round Multisensor Logger (WRMSL)

• WRMSL Quick Start Guide
• WRMSL Quick Start Guide 378P
• WRMSL User Guide
• WRMSL User Guide 378P

Laboratory Manuals and User Guides

Computer Support

• Current information for scientists sailing in 2008 and beyond
• Legacy information for scientists who sailed in 1985–2005

Shipboard E-mail

Laboratory Manuals and User Guides

• • General

  • Catwalk
  • Chemistry

  • Core Description

  • Core Laboratory General
  • Curation
  • Downhole Tools and Logging
  • Imaging
  • JOIDES Resolution Science Operator (JRSO) Laboratory Notebooks (available on the ship only)
  • Microbiology

  • Microscopy

  • Paleomagnetism

  • Paleontology

  • Physical Properties

  • Stratigraphic Correlation

  • Thin Sections

  • Underway Geophysics

  • X-Ray Diffraction (XRD)
    

  • Portable X-Ray Fluorescence (pXRF)
  • X-Ray Image Logger (XMSL)

  • X-Ray Fluorescence (XRF) Core Scanning Facility (Shorebased Lab and Web Site)

  • Legacy Information: JOIDES Resolution Labs (1985–2005) (Shorebased Web Site)

  • LIMS Tables for Miscellaneous ANALYSIS Codes (e.g., BHA, BIT, LATLONG)

• Laboratory Safety Policy Onboard the JR

• Data

• Computer Support

• Lab Working Groups

• Technical Staff Standard Operating Procedures (SOPs)

• Wiki Rules, Guidelines, and Resources

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