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Chemistry Lab and Microbiology Lab locations on Fo'c's'le Deck.



Overview

The Chemistry laboratory is used by shipboard scientists to conduct organic and inorganic geochemical analyses. A primary responsibility of the organic geochemists is to provide hydrocarbon data for safety and environmental concerns. In addition, instruments are available for determining the source, amount, and maturity of organic matter; carbonate content; and total carbon, nitrogen, and sulfur. 

Inorganic geochemists have a wide array of analytical instruments at their disposal for determination of a large range of interstitial water constituents that typically include pH, alkalinity, chloride, calcium, magnesium, sulfate, potassium, strontium, sodium, manganese, phosphate, silica, and ammonium. Two Laboratory specialists provide dedicated, 24-hour technical support.

Organic Geochemistry

Safety Monitoring

Organic geochemists perform a vital function on the ship by providing routine safety monitoring for hydrocarbon gases. Typically, a ~5 cm3 sediment headspace sample is collected at a frequency of one every 10 meters, heated, and the evolved gases are analyzed with a gas chromatograph (GC). When gas pockets are detected in the core liner, a vacutainer sample can be taken to sample the gas directly. One Agilent GC is equipped with an FID detector for rapid determination of methane, ethane, ethylene, propane, and propylene. The second Agilent GC is equipped with FID and TCD detectors to measure hydrocarbons from methane to hexane. In addition, nonhydrocarbon gases such as hydrogen sulfide, oxygen, nitrogen, carbon dioxide, and carbon monoxide can be analyzed at the same time as hydrocarbon gases.

Guidelines for this responsibility can be found at these links:

ODP Technical Note 30

http://www-odp.tamu.edu/publications/tnotes/tn30/INDEX.HTM

EPSP Safety Review Report and Expedition Safety Package Guidelines

https://www.iodp.org/top-resources/program-documents/policies-and-guidelines/1178-epsp-safety-review-report-guidelines-may-2022/file

Organic Matter

A Weatherford Instruments Source Rock Analyzer (SRA) uses a pyrolysis technique to identify the type and maturity of organic matter.

Elemental Analysis

Sediment samples can also be analyzed for total carbon, nitrogen, sulfur, and carbonate carbon. The total organic carbon of the sediment can be determined by calculating the difference between total carbon and carbonate carbon. Carbonate carbon is measured by coulometric titration using a Coulometrics CM5011 analyzer. A Thermo Electron Flash EA 1112 Elemental Analyzer is used to determine total carbon, nitrogen, and sulfur.

Inorganic Geochemistry

Shipboard interstitial (pore) water analyses are typically performed on waters extracted from 5–10 cm whole-round sections. The routine shipboard interstitial water sampling program calls for one whole-round sample to be taken per core for the first six cores, and one sample every third core thereafter. Pore water is extracted from core samples by applying pressures up to 40,000 lb (~4150 psi) with a Carver hydraulic press. Immediately after extraction and filtration, aliquots are analyzed for salinity using a hand-held particular refractometer and for pH and alkalinity using Metrohm titrators.

Chloride is also determined by titration. A variety of nutrients and other pore water constituents (e.g., ammonium, silica, phosphate, nitrate, and nitrite) can be determined using a Cary UV-VIS spectrometer. Numerous cations and anions can be analyzed using a Metrohm Ion Chromatograph (e.g., calcium, magnesium, sulfate). A variety of other elements can be determined by inductively-coupled plasma optical emission spectrometry on a Agilent ICP-OES 5110. A typical suite of elements determined for interstitial water samples includes Sr, Li, Fe, Mn, B, and Ba. In addition, hard rock samples can be analyzed for all major and minor elements.

Analytical Gas Monitor

_378P

Adelphi Twin Jet Ampoule Sealer

Alkalinity/pH - Metrohm 794

SM

Basic Titrino

autotitrator Alkalinity

Autotitrator 

  • Alkalinity Quick Start Guide
  • Alkalinity Quick Start Guide 378P
  • Balance
  • Alkalinity User Guide_378P
  • Balances - Cahn Model 31 Microbalance

    Balance -

    & Mettler-Toledo XS204

    dual

    Dual-

    balance systemAUTO Quick Start GuideCl _378P

    CHNS - Thermo Electron Flash EA 1112 Elemental

    Analzyer
  • CHNS Quick Start Guide
  • CHNS User Guide
  • CHNS Quick Start Guide_378P
  • CHNS User Guide_378P

    Analyzer

    Advanced _378P

    Coulometer - Coulometrics

    CM5011 
  • Coulometer Quick Start Guide
  • Coulometer Quick Start Guide_378P
  • Coulometer User Guide_378P

    GC

    _PFT

    - Agilent

    6890 Gas Chromatograph with Micro-Electron Capture Detector (PFT)

    7890 Gas Chromatographs

    GC2
  • GC2_PFT User Guide_378P
  • GC-PFT: Agilent 6890 Gas Chromatograph

  • GC3-NGA User Guide_378P (Archived)
  • with micro-ECD

    GC3-NGA Advanced User Guide_378P (Archived)

    IC - Metrohm Ion Chromatograph

    IC - Agilent Cary 100 UV-Visible Spectrophotometer (SPEC)

    Cary User Guide

    Cary _378P
  • Cary IC QSG_378P
  • ICP-

    AES - Teledyne Leeman Prodigy (Obselete)

    OES - Agilent 5110 

    ICP Quick Start User Guide Hard Preparation

    ICP-OES - Agilent 5110 

    MBIO Tracer Pump

    SALINITY - S66366 Refractometer

    SPEC - Agilent Cary 100 UV-Visible Spectrophotometer

    MBIO Tracer Pump User Guide_378P

    SRA - Weatherford Instruments Source Rock Analyzer 

    Quick Start Guide_378P
  • SRA User Guide_378P
  • SRA _378P

    TOC - Total Organic Carbon Analyzer

    XRD - Bruker AXS D4 Endeavor X-Ray Diffractometer 

  • XRD Quick Start Guide
  • XRD User Guide
  • XRD.EVA Quick Start Guide
  • XRD User Guide 378P
  • XRD Quick Start Guide 378P
  • XRD Diffrac.EVA Quick Start Guide 378P
  • XRD Diffrac.TOPAS Quick Start Guide 378P
  • ICP Hard Rock Sample Preparation 378P
  • pXRF User Guide 378P
  • pXRF Safety 378P

  • Please note that proprietary manuals may be available upon request and subject to limited use.

    Back to Laboratory Manuals, Guides, and Resources

    pXRF Quick Start Guide 378P