Introduction

When X-ray radiation from the handheld XRF instruments' X-ray tube (source) excites the atoms in the sample, the atoms release fluorescent X-rays. The energy level of each fluorescent X-ray is characteristic of the element excited. As a result, one can tell what elements are present based on the energies of the X-ray emitted. The Olympus DELTA Premium handheld XRF (pXRF) detects and determines the fluorescent X-ray energies, produced. These energy patterns are characteristic to specific elements and allows for elemental measurements on section halves and discrete samples.  It is standard for the onboard technician to train one or more scientists in pXRF operation and sample prep. The scientists are then responsible for the work flow during the expedition.

Theory of Operation

X-ray fluorescence is the production of X-rays in the electron orbits. The handheld XRF functions by bombarding the atoms of the target sample with x-rays. Some of the photons collide with K (and L) shell electrons of the sample, dislodging them from their orbits. This leaves a vacant space in the K (L) shell, which is immediately filled by an electron from the L, M, or N (M or N) shell. This is accompanied by a decrease in the atom's energy, and an X-ray photon is emitted with energy equal to this decrease.
Since the energy change is uniquely defined for atoms of a given element, it is possible to predict definite frequencies for the emitted X-rays. This means that when electrons are dislodged from atoms, the emitted X-rays are always identical. These X-rays are analyzed with an X-ray detector and the quantity of K shell and/or L shell X-rays detected will be proportional to the number of atoms of the particular element or elements present in the sample.

Apparatus, Reagents, & Materials

Laboratory Apparatus

Discrete Samples

• XRF Sample Cups (32 mm Double Open Ended) - located in the X-Ray Lab
• SPEX Ultralene thin film for XRF (0.16 mil; 4 µm thick)
• Whatman circles (Grade 540; 24 mm)
• Foam plugs
• Powdering equipment (dependent on sample hardness):
  • Agate mortar & pestle
  • SPEX Mixer/Mill® with alumina ceramic grinding cannisters
  • SPEX Shatterbox® with tungsten carbide grinding vessels

Section Halves

• Leaded section half shielding - located in the X-Ray Lab
• Shielded sample chamber - located in the X-Ray Lab

Instrument Hardware

• Olympus DELTA Premium handheld analyzer
  • Processor
  • Colour touch screen
  • Membrane navigation keys
  • Detectors and tube anode material
• DELTA docking station
• Prolene® Windows
• Four Li-ion Batteries
• Rugged waterproof transport case
• Calibration check (CalCk) reference coupon/coin
• USB data cables
• Battery charger
• AC power adaptor
• Portable Flex Stand (test stand)
• Power cords
• Shielded sample chamber for discrete samples

Computer & Software

• XRF Laptop & power bar
• Section half & discrete barcode scanner
• Innov-x Delta advanced PC Software

Apparatus Preparation & Set up

General Precaution: Isolate the Instrument

The pXRF station needs to be mobile, easily accessible, and maintain a small footprint. The station should be in a location where section halves can be brought in and out easily without disrupting other work stations or without danger of dropping or mishandling core material. As a safety precaution, the pXRF should be set up in a location with minimal people working nearby. Potential locations are the Down Hole lab, Paleo Prep lab, or the correlators' station (only if no stratigraphic correlator is sailing). Check with scientist and co-chiefs for preferred location. After finding an appropriate location for the pXRF, begin setting up section half and discrete sample stations.

Prepare Safety Talk

Work with the Co-Chiefs, Staff Scientist, and LO to identify the pXRF Users. Each user is required to wear a Dosimeter Ring while operating the pXRF. After identifying the scientists collect the dosimeter rings from the LO. Each ring has a unique ID and is assigned to a specific person. Check out the rings and record which ring is assigned to which person. Make sure to check out a ring for yourself as you will be demonstrating how to use the device and will perform safety checks on the instrument.
Prepare a safety talk and demonstration for the scientists who will be using the pXRF. For safety resources please refer to the IODP manual pXRF Safety Guide and the vendor provided DELTA Family safety chapter (found on the laptop) to familiarize yourself with the safety precautions. Make these documents available to the scientists.

Apparatus Preparation

pXRF Analyzer

Inside the pXRF case are: the pXRF, docking station, micro-USB cable, docking station power supply, pXRF AC power supply, and pXRF batteries.
The pXRF can be operated through the User Interface on the analyzer or through a dedicated pXRF laptop. Be consistent with the chosen method.
First take the docking station and place it in your dedicated area (Fig. 1). The pXRF will rest in the docking station when not in use. Connect the docking station to power through the labeled power supply.

Figure 1. Docking Station

Then take out the pXRF and rest it in the docking station (Fig. 2).

Figure 2. pXRF in Docking Station 

The pXRF has two options for receiving power: an AC power supply inserted into the device and connected to a wall socket or batteries inserted into the device. For measurements taking place over a small amount of time the batteries are fine, however for longer periods the AC Power Supply is preferred. Use the blue outlets marked for ship regulated power.  If using the batteries understand that if the pXRF powers off before data has been 'exported' from the software, all measurements will be deleted. The Olympus DELTA Premium pXRF has a small internal battery which allows the lithium battery packs to be "hot-swapped" without losing power to the pXRF. The internal battery will keep the pXRF running for approximately thirty seconds, so work quickly to slot the new battery into place.
Pull the rubber latch at the bottom of the handle open (Fig. 3).

Figure 3. pXRF handle open

Insert the preferred method of power supply into the handle (Fig. 4). The battery and AC Power Supply are keyed and only fit into the analyzer one way.

Figure 4. AC battery source inserted into pXRF

You can now turn on the device. Press the power button on the top of the analyzer  (Fig. 5).

Figure 5. pXRF power button outlined in red. pXRF is off in this figure. 

The button will illuminate green when on, as shown below in Fig. 6.

Figure 6. pXRF turned on

The following step is only applicable at this stage if controlling the pXRF through the computer. DO NOT TOUCH ANYTHING ON THE device SCREEN!! If choosing to use the pXRF alone move on to 'Discrete Samples'. The pXRF interface users will use the laptop during the 'Export Files' Section later on.

Open the dedicated pXRF laptop and login to the computer with the following:

user: XRFHost
password: $Olympus2020

To operate the device and have it correctly write files administrator privileges are needed. If you login with something different, such as 'daq' 'daq', there are no administrator privileges and the device will not work properly.
Connect the pXRF to the computer via the micro USB cord (Fig. 7). Micro USB ports are very fragile so take care when plugging in or removing.  To further secure the micro USB attached to the device it is suggested to wrap a zip tie around the cord and the handle.

Figure 7. pXRF connected to laptop via micro USB cable. A. micro USB port. B. Laptop USB port

Discrete Samples

1. To set up the discrete sample station collect the FlexStand Base and shielded sample chamber (Fig. 8).

Figure 8: FlexStand components. A. FlexStand Base B. Sample Chamber

2. Place the back of the analyzer into the indented portion of the FlexStand Base. The analyzer nose will point into the air as in Figure 9. Take note of the two indents in the analyzer nose.

Figure 9. pXRF in FlexStand base. Red arrow indicating two indents on analyzer nose 

3. On the Sample chamber there are two pegs and a release handle (Fig. 10). The release handle controls the pegs.

Figure 10. Bottom of Sample Chamber. A. Two pegs B. Release handle

4. The two pegs will fit into the two indents on the analyzer nozzle. Orient the sample chamber so the pegs will fit into the holes and lower the chamber over the nose (Fig. 11). The pegs will snap in when inserted.

 Figure 11. Sample Chamber resting over pXRF nose. 

5. When it is time to remove the sample chamber pull the release handle and while holding the handle, lift off the sample chamber (Fig. 12)

Figure 12. Release handle being pulled

Section Halves

In preparing for section half analysis, consider the safety requirements of the instrument. Prepare the area carefully, ensure everyone working with or around the instrument understands X-ray safety, and use the lead drape to protect from scattered X-rays. When the pXRF is in contact with a section half, most of the X-ray energy is absorbed by the sediment/rock. The scattered radiation is at a low (but measurable) level, so maintain reasonable distance between the pXRF and the user. Do not place your hands close to the nose of the instrument; keep them on the grip/trigger area or butt of the instrument.
Remember ALARA: keep your exposure As Low As is Reasonably Achievable.

1. Set up an aluminum core tray or plastic holders to hold the unwrapped section half (you will wrap it with Ultralene® later, but GLAD® Plastic Wrap is thick enough to interfere with measurements). Place the core tray far enough back from the edge of the bench that the pXRF will be several feet away from the operator.
2. Put a long ruler next to the core section to measure the offset.
3. Place the docking station to the side of the core tray.
4. Collect the rubber lead impregnated shield. Place the plastic window in the shield and move to the desired offset. The point at the intersection of the blue lines is the measurement location (Fig. 13).
5. When it is time to take a measurement the pXRF will lock in to the mat and secured with the screws as shown in Figure 14.
   
   

Figure 13. Measuring the offset. A. Lead mat with offset window. B. Offset window (crossing point of the blue lines is the offset)

Figure 14. pXRF being lowered into section half shielding. pXRF oriented with indents facing set screws.

Again, please note that it will be necessary to cover sediment core surfaces with Ultralene® film and GLAD® Plastic Wrap in order to protect the nose of the instrument and the underside of the shield from contamination. See Preparing Section Halves, below.
Important! Do not measure the sediment core section half without covering it with film! Exception might be hard rock core section (see Preparing Section Halves below).

Sample Preparation

Sample preparation is split into two main categories: discrete samples and section halves.

Preparing Discrete Samples

Discrete samples are dried, ground, and loaded into a XRF sample cup. Discrete samples allow the analysis of a specific interval or feature on a section half. This process is more involved, time-consuming, and invasive (destructive) compared to the section half measurement. However, discrete samples can be run along with powdered standard reference materials and the data can therefore be reduced for quantitative elemental data. Powdering a sample also creates a homogeneous sample. If the powder is fully homogeneous and the sample cup is loaded to sufficient thickness and uniform powder density, quantitative error should be low.

Drying Samples

It is important to dry discrete samples prior to grinding them. Freeze-dry samples for 12 hours. For details on how to operate the Freeze Dryer refer to the X-Ray Diffraction (XRD) sample preparation

Grinding Samples

Once dry, samples are ground into a talc-like powder. Grinding is accomplished by three methods: agate mortar and pestle, SPEX Mixer/Mill®, or SPEX Shatterbox®. The specific grinding method used is dependent on sample hardness. For more details on grinding methods refer to the X-Ray Diffraction (XRD) Sample Preparation and ICP Hard Rock Prep User Guide.

Loading Samples into an XRF Sample Cup

To create a discrete XRF sample, assemble the following components shown in Figure 15:

• Powdered & dried sample
• Scoopula
• XRF sample cups (32 mm Double Open Ended)
• SPEX Ultralene® thin film (0.16 mil; 4 µm thick)
• Whatman Filter Paper Circles (32mm) or Parafilm M® film
• Foam plug

Figure 15. Mortar and pestle along with scoopula. XRF Sample Cup components denoted with red arrows A. Open-end Ring B. Cup C. Cap D. Ultralene® film box E. Whatman Filter Paper F. Foam plug inserts

1. A XRF Sample cup has three components: cup, ring, and cap. Take a piece of Ultralene® film and stretch it over one end of the cup. Place the open ring over the film and cup and snap it firmly onto the cup. This will create a tight window on one end of the sample cup (Fig. 16, step 1). Ultralene® is very thin and prone to ripping. Check for rips before and after sample powder is added.

2. Flip this unit upside down and begin to load the sample into the cup. Remember that the discrete sample will be back loaded. An ideal depth of sample is ~15 mm or more, if possible. The sample layer cannot be too thin, or X-ray penetration (and the results) will be inconsistent. Make sure the powder is evenly dispersed, maintaining a relatively flat, even surface.

3. Next place a barrier layer on top of the powder, either Whatman Filter Paper or Parafilm®. This creates a seal that prevents contamination and keeps powder secured in place. Take a piece of Whatman filter paper and put it on the powder or cut a square of parafilm, wrap it over the end of the foam plug and put inside the cup. Press down evenly until it is firmly on the powder.

4. Insert the foam plug. Take care not to insert it too quickly and cause air displacement that might disturb the powder. Depending on how much sample has been loaded into the sample cup; a couple centimeters of the foam may need to be chopped off.

5. Once you have filled the unit properly, place another piece of Ultralene® film across the back of the sample cup and snap the closed cap on the cup. If you have over-filled the sample cup, this is the point where the film will break, so examine both sides of the cup after you snap the lid on.

6. It is important to create some outward "bowing" of the film so that the powder stays well-packed and stationary. Cracks, gaps, or inconsistent filling of the powder will create inconsistent results. Be careful, however, not to pack too tightly or the Ultralene® film will break and you will have to start over.

Your finished product should look like the cup in Figure 16, step 6.

7. Put a sample label onto the cup. Remove excess Ultralene® to help the label stick. The discrete sample is now ready for analysis.

Figure 16: Sample preparation steps for discrete XRF sample. Note the slight bulge of the sample when correctly filled.

Do not forget to remove the sample from the pXRF sample cup after analysis. A 3D-printed tools exist to help disassemble the sample cup. Put powder back into it's original container or put it in a labeled jar (shipboard residue). Wash and clean the pXRF sample cup components to reuse.

Preparing Section Halves

Sediment and hard rock section halves have different preparation. Please make sure to read below carefully and check with the EPM and X-Ray technician for the best procedure. See also the website of the onshore XRF laboratory at IODP - Gulf Coast Repository for detailed information regarding section halves preparation. The beam coverage is about 25 mm² and the ideal thickness of a sample should be 15 mm or more.

Sediment section halves

Before any pXRF measurements, make sure to scrap the surface with a glass slide to make it flat and remove any foreign component (e.g., drilling mud, mold, etc..). A flat surface is important for the quality of the XRF analysis.

For each selected measurement point, cut a piece of Ultralene® long enough to cover across the core section at the location(s) you intend to measure from. Note: Ultralene® film is quite expensive (about $1 US/meter) and it is not practical, nor necessary, to cover the entire length of each core section. Tape the film on the sides of the liner and use a Kimwipe on the film to remove any trapped air bubbles under the film in the area of measurement. Cover the rest of the section in GLAD® Plastic Wrap so the instrument and rubber, lead-impregnated shield does not get dirty. Make sure the top of the plastic is clean, dry, air-free and mud-free, especially the Ultralene®-covered locations.

Important! Even a small amount of sediment on top of the thin film from a measurement will affect the next measurement of the core section half.

Hard rock section halves

Following the procedure at the onshore XRF laboratory in College Station (Texas), no film is put on hard rock sections. The surface is cleaned with DI and Kimwipe. When dried, the core surface is brushed to remove any remaining dust/contaminating particles. The pXRF device is then placed on top of the hard rock core section for measurement.

Starting the Software

Note: Independent of sample type (discrete or section half) all samples follow the same procedures for taking and storing XRF data.
The computer interface and the pXRF interface are different. Follow the appropriate instructions. The computer interface is STRONGLY recommended.

Computer Interface 

Double-click the Innov-X Delta Advanced PC Software icon on the desktop (Fig. 17) to launch the software.

Figure 17. Innov-X software icon.

The initial start-up window will appear (Fig. 18) after turning on the device and the computer, wait a moment and then click the 'Close Device App' button. The PC Software will not let you continue on if the Device Application is active. If you are the first person of the calendar day to use the device, click 'Import Data Only'. Import Data Only moves only the analytical data from the pXRF to the PC. IMPORTANT NOTE: If you are not the first person of the calendar day, when you start Innov-X, do NOT click again on 'Import Data Only'. Click directly on the 'Start' button. You will loose the previous person's data otherwise, it will be overwritten and not appended if you keep the same data file name. See "Processing Sample Results" section below.

Figure 18. Innov-X Start-up Screen 

Important! Do not click the Import to PC button!
The Import to PC button overwrites the saved method on the PC with the method stored on the pXRF unit. This is likely to be factory settings and not the methods needed for the analysis, so it is a very undesirable action.

Once the 'Close Device App' button has been clicked, the 'Start' button will become active after a brief pause to sync the instrument with the software. Click Start. The login screen appears (Fig. 19). Enter the following information:

• User Name: innovx
• Password: 1776

Figure 19. Login screen. Login button outlined in red  

The main measurement window then pops up.

Performing a Cal Check

Before any measurements are taken, a Cal Check needs to be performed. A Cal Check is an internal calibration check in which the analyzer measures a particular stainless steel alloy to ensure the unit is measuring properly. A calibration check is required when the device is turned on and every 10 hours thereafter. The information bar indicates when a Cal Check is needed by displaying “Perform a Cal Check” as shown in Figure 20, arrow B, below. It is not possible to proceed until the check is done. Place the device in its docking station.  The disk needed for the cal check is embedded in the docking station.

Note: When using the Flex Stand, it is possible to perform the Cal Check by simply placing a stainless steel disk on the instrument nose and closing the lid of the Flex Stand. An extra stainless steel disk can be found in the pXRF supplies.

Figure 20. Performing a Calibration Check. A. CalCheck Button B. Indicator Bar C. Disabled ‘Start’ button

Click the Cal Check button located on the bottom left as shown in Figure 20, arrow A. The instrument will measure the stainless steel disk and check the peaks and their ratios to ensure that it’s getting the expected results. The Start [analytical measurement] button will remain grayed-out and disabled until the pXRF passes the CalCheck. When successfully completed the white bar will say 'Cal Check completed successfully'. If the analyzer fails a Cal Check please refer to the ‘CalCheck Fails’ Section in Troubleshooting.

Setting Parameters

Parameters that require setting or editing include: mode and measuring time.

Selecting the Mode

Choose either the Geochemical or the Soil Mode; each one has specific scanning parameters, and preferentially scans certain elements. Discuss with scientists which mode is preferred.
Note: Once a mode is selected, it does not have to be re-chosen before each measurement or when the device is turned on/off.
Click on Mode, located top right in Figure 21 (arrow A). On the left hand panel, you can choose between Geochemistry and Soil modes (Fig. 21, arrow B). Click on each to see the elements scanned and the beam conditions used in each mode.

Figure 21. Mode window. A. 'Mode' tab B. Measuring Mode options. Elements and beam information for Geochem (on the left) and Soil (on the right) modes

Selecting Measuring Time

Establish the measuring time for each beam. To access this, click the Set Up button at the top of the screen as shown in Figure 22, arrow A, below. On the left hand panel, click Test Condition. This will show the minimum (Beam # Min) and maximum (Beam # Max) time currently set for each beam. Adjust the settings as desired in seconds and click Save.

Note: Check to make sure the Spectrum files are set to one spectrum output for each reading, not an averaged spectrum file. You can verify a spectrum file was created for each run by seeing a spectrum graph in the results window. 

***IMPORTANT*** Select 'LiveTime" for Test End section (Figure 22D). Not selecting 'LiveTime' will not complete spectrum measurements properly.

Figure 22. Innov-X Set Up Screen. A. Set Up tab B. Test Condition button C. Test Time area D. Test End section E. Save button

The behavior of the Test Time settings is as follows. If the minimum time is set to 1 s and the maximum time is set to 30 s (as shown in Figure 22, arrow C), the pXRF will scan until it determines that it has a good profile (via manufacturer-defined quality conditions) and stop measuring before it gets to 30 s. However, even if the pXRF has not reached a "good profile," it will stop at the maximum time.
If the user wants to ensure the pXRF measures for the same time on each measurement, set the minimum and maximum time to the same number (e.g., Beam 1 Min = 30, Beam 1 Max = 30). We do not recommend measurement times below 30 seconds, and longer times may be necessary to get good resolution of weak lines.

Naming the Sample for Measurement

In the Analysis Window, click the blue button with the three dots located in the upper left corner as shown by the B arrow in Figure 23.

Figure 23. Analysis screen closeup. A. Current run number, B. Click on the blue "…" to enter test information (see Figure 24)

The measurement naming window will appear (Fig. 24). Enter sample information here.

Figure 24. Test Information window. IODP-defined fields are circled in red (arrow A). B. Save button. C. Start button.

This window contains fields to identify the sample. Arrow A in Figure 24 highlights the IODP-defined editable fields, defined as follows:

• Run Number: A sequential number increased by +1 with every measurement, ex: 1, 2, 3… This number should start at 1 for the first measurement of the expedition. This should be unique throughout the expedition, so the use of a logsheet is highly recommended.
• Sample Name: Sample name according to the sample or section half label. Ex: 366-U1234A-20F1-W.
• Text ID: Unique database identifier for each sample or section half located under the barcode on the label. Ex: SHLF8638181
• Offset for SHLF: The point where a measurement was taken, measured as distance from the top of the section. Leave this field blank for discrete samples. Note: Be sure to enter one single number, not a range. (Example:  Wrong 100-101, Correct: 100.5)
• Comment: A brief description of the measurement. An optional field.

First enter the run number manually. Then put the cursor in the 'Sample Name' field and scan the label with a barcode scanner. This will populate the 'Sample Name' and 'Text ID' fields. If measuring a section half enter the offset in 'Offset for SHLF'; leave this field blank for discrete measurements.

Important! Click Save in the lower right portion of the screen (Fig. 24, arrow B).

If you do not click 'Save', the sample information will revert back to values entered for the previous run and the new measurement will have the same name as the previous one. The measurements are parsed by time so measurements will not overwrite one another; however, there will be multiple measurements with the same information, and the data will have to be sorted out later.

The barcode scanner has been programmed to properly parse the different kind of label for section halves and other types of samples. The fields should fill with the label ID (e.g., 366-U1498B-23R-3-W…) and Text_ID (e.g., PWDR8638211). If they are not working correctly reprogram the scanners by going to IODP_SHARE > XRF > Barcode Rules and scan the rule set.

If the user needs additional fields to describe the sample or the measurements being done, the technician can modify the method to enable up to 11 additional user-defined fields. To see how to add fields refer to the section 'How to Add Fields to Sample Information Window'.

pXRF User Interface

The pXRF User Interface allows you to perform analysis controlled directly from the device. This is NOT recommended.

The DELTA's user interface starts with the start-up radiation safety and initialization screens (Fig. 25). Read the radiation safety notice screen, and then confirm that you are a certified user.

Figure 25. Start-up Radiation safety and initialization screens. 

System initialization begins immediately after confirmation (Fig. 26). The analyzer launches a test screen using the previously selected mode.

 Figure 26. Initialization and test screens.

Performing a Cal Check

Before sample testing can begin, a Cal Check needs to be performed. This will be shown by a "Cal Check Required" message located on the bottom left of the screen. A Cal Check measurement tells the device to measure the stainless steel disk located in the stand. This is an internal calibration which ensures the device is measuring properly.
Note: Cal Checks must be performed when the analyzer requests the procedure (once when the program is started, and once after every ten hours of testing). The Start Test button and trigger are disabled until a successful Cal Check is achieved. The Cal Check can be run any time during software operation, except during a test. When the Cal Check is in progress, the X-ray indicator light assembly blinks. This indicates that the X-ray tube is energized.

To perform a manual Cal Check: Place the analyzer it the DELTA docking station. Tap the Cal Check button.
Note: The deadman trigger are overridden when the analyzer is mounted in the docking station. If necessary, unlock the software trigger lock by tapping the Lock button at the top of the screen.
If the "Cal Check – Passed" message appears on the Results screen, the analyzer is ready for sample testing. If the Cal Check refer to the 'CalCheck fails' section in 'Troubleshooting'.

Setting Parameters

Tap the Home button  . You are now in the main measurement window. First set the Mode in which you'd like to measure in. The device has a Geochemical and Soil Mode. Each one has different scanning parameters which preferentially pick up some elements better than others. The device will remember the chosen mode and does not have to be chosen each time a new measurement is taken or the device is turned off/on.

To access the Modes click on 'Mode' button  . This directs you to the 'Mode' Screen where you can choose between the Geochemistry and Soil modes (Fig. 27). Click on each to see it's corresponding features and select the one best for your analysis.

Figure 27. Mode Screen (Mining Plus corresponds to Geochemistry mode).

Now that the Mode is set, establish the measuring time for each beam. Each Mode has preset measuring times but these are changeable. To access the Measurement Time, in the Mode Setup screen click on 'Test Condition.'
 In the Test Conditions screen, tap the Test/Tools button  . This brings you to the Test Setup screen (Fig. 28). Enter the Minimum and Maximum time currently set for each beam (Fig. 28). Adjust the settings to your liking and click 'Save'.

Figure 28. Test Setup screen.

Note: If the minimum time is set to 1 and the maximum to 30, if the device determines it has a good profile in less than 30 seconds it will stop actively measuring. If you want to ensure it measures for the full time, set the minimum and maximum time to the same number. Ex: Minimum 30s and Maximum 30s

Naming a Measurement

Staying in the Test Setup screen, tap the Label Defaults button located in the bottom left corner.  

This is where you can manually input sample information. Editable fields are as follows: Run Number, Sample Name, Text ID, SHLF Offset, and Comment (optional field).
Run Number: A sequential number increased by +1 with every measurement, ex: 1, 2, 3… This number will start at 1 for the measurement of the expedition.
Sample Name: Sample Name according to the sample or section half label. Ex: 366-U1234A-20F1-W
Text ID: Unique 11 digit ID for each sample or section half located under the barcode on the label.
Offset for SHLF: The point where a measurement is made on a section half, measured as distance from the top of the section. This field will only have a value for section half measurements.
Comment: A brief description of the measurement. An optional field.
Click 'Save' in the lower right portion of the screen. If you do not click save the information will revert back to the prior run and there will be two measurements with the same name. The measurements are parsed by time so measurements will not overwrite one another there will just be multiple measurements with the same information.

Preparing the Sample for Measurement

Discrete Measurement

1. Open the mount door. The measurement window should lay flush with the bottom interior of the sample chamber.
2. Insert the discrete sample oriented face down towards the X-ray beam. ALWAYS make sure only smooth, flat surfaces go on the X-ray window. The pXRF has a very thin Prolene window that can be easily torn and is the only barrier between the beryllium window and the sample. If the window becomes torn stop measuring immediately and replace the window. The Beryllium window is very fragile and brittle, any particles coming into contact with it can ruin the window and make the pXRF unable to measure accurately.
3. Close the mount door, and make sure the shielded mount is firmly and safely attached to the analyzer. The discrete sample is ready to be analyzed.

Warning! NEVER activate the X-ray source when the Flex Stand door is open! The Sample Chamber door does not have a safety trigger and the pXRF will continue to emit X-Rays if the door is open.

Section Half Measurement

1. Locate the area on the section half to be measured. If measuring sediment, make sure that section portion has a layer of Ultralene® film on it. Put a layer of GLAD® wrap on the rest of the core that the lead shield might touch. We do not want to contaminate the core or pXRF. If hard rock, make sure that the section is dry and perfectly cleaned before measuring (a Ultralene® film may not be necessary).
2. Place the shield over the core so the point of measurement is centered. Use the plexiglass view-finder to help find this spot.
3. Take note of the measurement position on the core using the ruler. Lower the pXRF into the shielding oriented so the two indents on the analyzer are on the same side as the tightening screws.
4. Tighten the screws until it feels firm. This locks the pXRF into place and helps stabilize it. Keep a hand on the handle while measuring to ensure it does not fall.

Starting a Measurement

If the minimum time has been set to the same number as the maximum time for each beam setting (see Setting Parameters, above), the run time will be exactly what was set. If the minimum time is smaller than the maximum time, the pXRF may stop the measurement early, if the quality of the measurement satisfies its internal quality criteria. (These criteria cannot be adjusted by the end user.)
Important! Record each measurement taken on the paper log sheets provided by the technician. The log sheet will be a life-saver later in the expedition.

PC Interface

Press the green Start button located on the bottom left of the screen as shown in Fig. 29 (arrow D), below. The measurement can be started in either the Test Information (Fig. 24) or Analysis window (Fig. 29). The spectral graph and elemental concentrations will populate after each beam has completed measuring.

Figure 29. Analysis window: Test completed. A. Current run number, B. To enter test information (see Figure 10), C. Test completed, D. Start Button to start next measurement 

pXRF Interface

 Navigate to the Test screen (Fig. 30). Start the test by pulling the trigger or tapping the Start Test button .

Figure 30. Start and mid-way through an active test.

The results are displayed immediately upon test completion. Tap the Spectral Plot button to view the spectrum results (Fig.31). Make sure each measurement has its own spectrum results. If results are being averaged the spectrum graph will appear blank.

Figure 31. Completed test and results. Results shown as both a list and as a spectrum. 

Processing Sample Results

Results are exported to a C:\Data\IN Folder and then uploaded to the LORE database via Mega Uploader Tron (or MUT). pXRF interface Users follow instructions on connecting the device to the laptop. PC Users jump ahead to 'Exporting Results'.

pXRF Interface

If using the pXRF interface at this point the laptop needs to be turned on and logged in as pXRF host. Then connect the device to the computer using the micro-USB cable. Open the software icon. Click on the 'Import Data Only' Button. This allows data storage on the computer. Do NOT click 'Import to PC' as this removes all configurations from the device. Then login with:
Username: innovx
Password: 1776

Exporting Results – All Users

The device writes one file per day that contains all the measurements taken in that 24-hour period. Until that file is exported the measurements are not permanently attached to the file.
Important! If files have not been exported DO NOT disconnect the device, turn off the software, or turn off the device; otherwise those un-exported measurements will be lost. For this reason, be sure to keep an eye on remaining battery life (or use the AC power adapter to provide continuous power to the pXRF).

If running from the computer and communication error occurs FIRST export data and then restart system to clear errors. So long as the device is not unpluged and the data is NOT imported on start up the data should remain/ stored locally. If data is imported when software is restarted the data will be over written and lost, that is why it is best to export both .csv and spm files before clearing errors.

To export a file, click Set Up on the top right corner of the screen (Fig. 29). Click Data Management located on the left hand panel as shown in Figure 32.

Once the Data Management screen appears, files can then be exported. The results are organized by date in the window on the right hand-panel as shown in Figure 32, arrow A. Select the date-referenced file you wish to upload. Make sure the Data or Spectra button is selected (designated by the presence of a check mark; in Figure 32, at arrow B, the Data button is selected).

• Data: reduced data will be exported; extension is .csv.
• Spectra: raw data and metadata will be exported; extension is .spm.

Export a data file and a spectra file for each file. It is important that the filename be the same for both files. For example, follow this naming convention: MM-DD-YYYY.extension, examples shown here:

• Data File: 07-23-2017.csv
• Spectra File: 07-23-2017.spm

Note 1: Data files will default to ExportData-07-23-2017.csv and Spectra files will default to ExportSpm-07-23-2017.csv. In order for MUT to be able to upload data, the Spectra file extension needs to be changed like with the extension .spm (like shown above) before the file is exported in order to match the exported .csv file (i.e., the Data File).

Note 2: There is a maximum limit of data saved in the .spm file. A maximum of 128 runs can be saved. It does not seem to be a maximum number of runs saved for the .csv file.

Other file types are possible, but are not our normal procedure; talk to the technician if you need a different file type.

Figure 32. Exporting a file. A. List of all stored files. B. Data or Spectra selection C. Pathway where exported data goes D. Filename E. Export button

In Figure 32, A indicates the date-referenced data files. These can be exported one by one, or multi-selected. (Or, click Select All to highlight and export all of the files, but this will be difficult to sort out.)
Arrow C indicates the destination path. This should always be set to C:\DATA\IN\. Arrow D is the filename; make sure it matches the file format defined above.

Once the data type (we suggest always starting with Data to help prevent mistakes) is selected, the date-referenced results are selected, the path set, and the filename assigned, click Export. Repeat the process for the Spectra file, again, making sure the filename is the same as the Data file, but with the .spm file extension. The active file type has the red check mark.
After the files have been exported the measurements are attached to the file. Multiple exports can be done in the same day (recommended); however, the measurements will still be written to the same date file. A  pop-up window will ask you to 'overwrite' the already existing file, click 'YES'. The measurements are appended to the same date file. If you are unsure if you are overwriting previous samples from earlier in the day (if you weren't the first user of the day, but you selected 'Import Data Only'), add your initials to the file name to save. 

Example: 10 measurements are exported at 11:00 on 03-15-2017. Then 5 new measurements are taken and exported at 15:00 on 03-15-2017. The 03-15-2017 file now has 15 measurements that are exported in spite of 10 measurements being exported earlier in the day. This may cause duplicate records to be uploaded to the LIMS database; see a technician if this occurs.

Uploading Files to LIMS

This step is done by the X-Ray Lab technician.
Open MegaUploadaTron (MUT). If the file(s) are not yet in the DATA > IN folder; transfer them now. MUT requires two file types per uploaded file: '.csv' and '.spm'. The filenames must be identical for MUT to recognize the two as linked and MUT will not allow an upload unless both files are present. If the files are not listed in MUT, it is possible that one Excel file is open. Close all Excel files if the case.
Check the boxes for the files to be uploaded. The Misc column identifies files that have not been uploaded as shown in Figure 33.

Figure 33. MUT XRF Uploader.

Click Upload in the bottom right of the window. This brings up the pXRF Pre-upload Form as shown below in Figure 34. This form lists all measurements and allows files to be edited. The fields in white are editable: Run Number, Sample Name, TextID, Offset for SHLF, and Comment. Measurements can also be checked or unchecked to upload or not upload to LIMS. Cross check measurements with the log sheets and make edits as necessary.

Figure 34. MUT pXRF Pre-Upload Form. A indicates the selection boxes. B. Editable fields

Keep a close eye out for duplicate lines. It is easy to inadvertently create multiple measurements with the same name, if the Save button isn't pressed when identifying the sample (see Naming the Sample for Measurement, above).
If any changes need to be made to the editable fields or if scientists require a different file type, from the MUT main screen, click Options > Set active analyses… to open the Configure Active Analyses window as shown in Figure 35. Follow the prompts in the window and select Handheld X-Ray Fluorescence Analysis to see the configurable options. The option wheel icon will only appear when the analysis type is on the Active uploaders side and is highlighted.

Figure 35. Configure Active Analyses screen (pXRF shown active). 

Once the wheel is clicked, the window in Figure 36 appears.

Figure 36. MUT Settings for pXRF Analysis.

These settings determine what MUT is searching for to validate the data before upload. These values are editable, but it is strongly recommended to have a developer assist you with this. If other labels (see Naming the Sample for Measurement, above) are enabled in the Olympus Innov-X software, those columns can be added here. Add the column name to the EditableColumns value exactly as it appears in the Innov-X menu.

Quality Assurance/Quality Control

This measurement is highly affected by surface conditions, the heterogeneity of the sample, the size of the features in a heterogeneous sample, and the quality of the instrument-sample connection. Even a slight tilt of the instrument, for example, may have a significant effect on data quality.
It is highly recommended for the scientist to develop a quality control plan, to measure known standards for discrete samples (see Measuring Accuracy for Discrete Samples below). This is not possible for section half measurements; the user cannot judge accuracy of the elemental chemistry on section halves—only precision by measuring some of the positions more than once. (Be sure to label deliberate duplicates carefully!)
When measuring discrete samples for quantitative elemental chemistry, it is important to follow good laboratory practices: bracket the elements of interest (wherever possible) by the standards, ensure that samples are uniformly made (so that packing density is not an issue), etc.
When measuring section halves, unfortunately, the instrument cannot make quantitative measurements without significant post-pXRF work. In general terms, this means taking a representative number of discrete samples for each lithology, measuring them by another method like ICP-AES, and then calibrating the pXRF data for that lithology. Differences in moisture content, porosity, composition, surface smoothness (for good contact for the pXRF) will all have an impact—often a strong impact—on the quality of the results.
That being said, the power of pXRF for qualitative measurements of sediment and hard rock is very great (presuming heterogeneity is accounted for). A technique of evaluating elemental peak ratios can help to normalize results (but not quantify) for variances in physical properties, for example, and downhole trending can be displayed (similar to XRF Core Scanner results).

Measuring Accuracy for Discrete Samples

It is not straightforward to determine accuracy for section halves, so this section applies to discrete samples. Calibration curves can be created by measuring powdered rock and sediment reference materials whose elemental responses bracket the samples.
Properly calibrated energy-dispersive XRF results, on homogenized and consistently-packed samples (or pressed pellets or flux fusion beads), can be expected to produce results of similar data quality to that of ICP-AES. (The detection limits are quite different, of course.)
It is recommended to measure some of the standard reference materials as unknowns during the analytical process in order to characterize the accuracy of the method. If all of the variables are properly controlled, accuracy of ±5% or better should be achievable.

Available pXRF cups with standard reference materials for calibration curve are: BE-N, BCS-CRM-368, BCS-CRM-393, LKSD-1, LKSD-4, JR-1, RGM-1, JB-2, JP-1, DTS-1, BIR-1, OKUM, NKT-1, JA-1, JA-2, DTS-2b, MRG-1, SO-3, Nod A-1, AGV-1, JB-3, DNC-1, JG-1a, CGL-001, UB-N. The mounted pXRF standards are located in a drawer in the Phys Props area of the Core Lab.

QAQC STANDARDS: Scientists should regularly measure pXRF standards for measurement accuracy during the day. Two flagged standards are available: BHVO-2 (Basalt, Hawaiian Volcanic) and BCR-2 (Basalt, Columbia River) (Fig. 37). More information on QA/QC can be found at Shipboard QAQC Standards.

Figure 37. QAQC Rock Standards used for pXRF data accuracy: BHVO-2 and BCR-2

Please use the following Text_ID when measuring the standards for QA/QC to see in QCViewer:

BHVO2 : OTHR10999061 (QAQC XRAYPXRF pXRF_BHVO 2)

BCR-2 : OTHR10999071 (QAQC XRAYPXRF pXRF_BCR 2)

QCViewer can be found at: http://ship.iodp.tamu.edu/QCViewer/#/qcviewer

Measuring Precision

Precision measurements are quite straightforward for pXRF for both discrete samples, but for section halves there are complications that must be discussed.

Discrete Samples

Discrete sample precision is expected to be quite high, with percent differences <1% for replicate measurements of either samples or standards. Differences higher than that may represent non-homogenous packing of sample cups.

Section Halves

If the pXRF is not moved between measurements, precision will be very high (similar to that for discrete samples). However, if the pXRF if moved and is not placed in the exact same spot as the previous measurement, the precision is likely to be significantly lower, depending on the characteristics of the core section in question.
It may be quite useful, therefore, for the user to make such measurements, attempting to place the pXRF back in the same place, in order to define some of the limits of the precision of the measurement.

Maintenance and Troubleshooting

Maintenance

It is important to keep the pXRF clean and if the Prolene® window becomes dirty (or breaks), it should be replaced immediately. For instructions on how to replace the Prolene® Window please refer to the Olympus 'DELTA_Family--User—International' User Manual found on the laptop.
Keep the batteries away from extreme temperatures, and talk to the ET's about the best way to promote long battery life.  
Mini-USB ports are very easy to damage, so take care to protect it against force from the side (i.e., pulling the cable sideways).  The cables are somewhat easy to damage, but the biggest concern is the port itself.  Use a zip tie to secure the cable to the handle of the device to prevent it from moving.

Delete Files from Software

In the Set Up > Data Management area select the box next to 'Delete'. Then select the files to be deleted. A blue 'Delete' button will appear at the bottom of the screen. Click the 'delete' button. Restart the software to see be removed.

Replace Ultralene Window

It is critical during the process to keep the surrounding area and analyzer clean. Do not touch any internal components or allow anything inside the analyzer.

1. Turn off the analyzer and make sure the surrounding area is clean.
2. Collect a Prolene® Measurement window from the device briefcase, a small Phillips head screwdriver, and a box of KimWipes
3. Orient the analyzer so the nose is pointing sideways. This will help minimize the likelihood of anything falling into the analyzer.
4. Remove the two screws on the plate using the Phillips Head screwdriver (Fig. 38)

Figure 38. XRF nozzle showing ultralene window replacement

5. Swing the face plate outward. The film window is now exposed.

6. Remove the damaged window.

7. Take the new window, grabbing it by the edges, and place it on the plate. Orient the window so the backside (side fully covered with film) facing upward.

8. Double check the white window spacer and black rubber gasket are seated properly, and then rotate the hinged plate upwards.

9. Insert the screws and tighten until snug.

Directions and images for this section were provided by Olympus Delta Family User Manual. For more details on this procedure please refer to the 'DELTA_Family—User—International Guide'.

Add User Defined Fields

1. Go to 'Setup' tab at the top and then 'Result Test Info' in the left panel.
2. Select 'Customize..'
3. Labels with the Red Check are enabled. Select the 'enable' box next to the next Test label number.
4. On the right side select the appropriate test label number from the dropdown.
5. Define the 'style' from the next dropdown as 'text', 'fixed list', 'auto incrementing order'.
6. Give the test label a name.

The label is now created and it has to be setup for being exported.

1. In the left panel go to 'Data Management'
2. Select 'Customize' underneath the Data and Spectra boxes.
3. Under the 'Fields' panel select the test label number you just made from the 'Not Exported' panel. Then click the left pointing arrow to move it into the exported field.
4. Click the 'Up' button to move the label into position. The vertical order transposes left to right in the .csv and lore report.
5. Click 'Save' at the bottom of the screen.

User Factor

The pXRF has a feature to apply linear regressions for elements, quantifying data as it is measured. It is NOT recommended for use. Data Quantification should be done outside of the software by the scientists. Please note that this feature can provide erratic results and not detect elements that are present.

All data from the handheld pXRF should be considered qualitative (like the big XRF Core Scanners back on shore at the GCR) unless the scientists do the HUGE amount of work to measure representative materials, a representative sample of the samples (see Note 2 below), adjust for differentials in moisture content, etc. In other words, the standards are powders mounted in the XRF cups, while the section halves or TSBs are not in that form. The XRF data get from each of those (powder mounts, section halves, and TSB) are all going to be different and have different concentration-to-count ratios.

Note 1: we prefer uploading the data without any correction factors (slope, intercept) included because there’s no easy way to export that information from the device and then upload and/or qualify the LIMS data with those factors. This especially applies to section halves and/or discrete samples (e.g., CUBE or TSB samples). See Note 3 below about powdered samples and powder mounts.

Note 2: grain size/spot size is a big issue for the pXRF because the spot size is 8 mm (or 10 mm) for our device.

Note 3: If you take the time to create powders so that the samples and standards are in the same form factor and are prepared the same way, then you can run the standards, determine the slope/intercept values to correct the inherent instrument calibration to your sample set, enter those into the device software, and then produce quantitative data from the powder samples. This requires a good hand at creating the XRF cups so they’re (a) consistently full (you want at least 1 cm of powder to be “infinite” depth for the X-rays), (b) consistently made, and (c) don’t have air gaps. Once you have the cups filled, you measure them using the test stand (samples upside down on the instrument nose and inside the shielded cover) and you can get quantified data.
Note 3 *only* works when you’re comparing like to like. You should *not* attempt to use powdered standards to quantify non-powdered samples.

Troubleshooting

Indicator Bar shows a 'CommError'

This indicates a Communication Error between the pXRF and the computer. If this error shows up at the initial startup window, close and restart the software. The device must be connected via the micro-USB cable before turning on the software. If this error shows up while the software is already open, close and restart the software. In this instance the connection between the analyzer and computer was broken, either through the cable being unplugged or the device turned off. 

Do not click 'Import Data Only' when you re-open the software without turning off the computer and the pXRF device. Click 'Start' directly. The data will be lost otherwise (overwritten if the file name is not changed). See "Computer Interface" above.

Files are missing from the Data Management Panel

This could be a range of issues:

1. (Most Likely) Connection between the analyzer and computer was broken before files were exported. If a file is not exported before the communication is broken, either intentionally or unintentionally, the measurements are not saved.
2. The memory card on the XRF device was too full and the device started deleting files
3. The software versions on the PC and the analyzer do not match.

Looking through the results tab and it shows no or a partial list of samples

A 'filter' has likely been applied to the results display. Select 'Filter' in the lower right hand corner and adjust as needed to include the results.

Cal Check Fails

Go through these steps:
Remove the device and clean the stainless steel disk and Prolene® window. Try to measure again. If it still fails, restart the software and device then try again (make sure to export any data first). If it still fails, replace the stainless steel disk and measure again. If none of this resolves the issue, then contact Olympus and David Houpt.

Health, Safety, and Environment

Handheld XRF Analyzer Safety Design

To control X-ray emissions, and thereby minimize the possibility of accidental exposure, the Olympus DELTA Premium pXRF analyzer has a standard safety interlock structure consisting of two features listed below. Be sure to understand the software trigger lock setting to understand whether the trigger is "armed" or not.

Software proximity sensor

Within two seconds of starting a test, the analyzer attempts to detect backscatter radiation from the sample. If it fails to detect this backscatter radiation (i.e., no sample is detected), the test aborts to prevent accidental exposure. Upon an abort action, the filter wheel returns to the 0 position, the X-rays shut off (the tube current decreases to 0.0 µA), and the red light stops blinking. If the probe is pulled away from the sample while a test is in progress, testing will stop and X-rays will shut off.
This safety works slightly differently inside the sample chamber. If the pXRF starts measuring inside of the sample chamber without a sample inside the X-rays will continue emitting until it switches to Beam 2. At the start of the second beam the analyzer will abort the measurement. Beam 1 is a higher voltage and the analyzer detects the x-rays bouncing off the walls in there. If a run was started but a sample was not put in the chamber it is NOT SAFE to open the sample chamber door.

Software trigger lock (not applicable if you are controlling the device via the software on the laptop)

After a five-minute lapse between tests (default time), the trigger automatically locks. The pXRF analyzer also has a dead man trigger protocol, in which the user is required to pull and hold the trigger for the duration of the test. When the dead man trigger is enabled, releasing the trigger prematurely will abort the test. However, it is not recommended to use the trigger—instead, trigger the measurements from the PC, and thus further away from the instrument.

Indicators and Alarms

X-ray Indicator

An X-ray indicator alerts the operator when the tube is receiving power and when X-rays are emitted from the analyzer through the measurement window. The X-ray indicator is located on the upper rear portion of the analyzer. This indicator consists of a six-element red LED array, and has three states:

X-ray Indicator Lights OFF

This signifies that the X-ray tube is disabled, and that there is no possibility of radiation exposure to you or bystanders. The instrument can be carried or set down safely in this condition.

X-ray Indicator Lights Continuously ON

Solid red LED array. This signifies that the X-ray tube is enabled, and that there is no radiation exposure to you or bystanders. The instrument can be carried or set down safely in this condition.

X-ray Indicator Lights Flashing ON and OFF

Blinking red LED array. This signifies that the X-ray tube is powered on and that the analyzer is emitting X-ray radiation through the measurement window. In this condition, the analyzer must be pointed toward a test sample and never at a human being.

Audible Alarm Protocol (not currently enabled)

When enabled, the audible signal emits three tones as a warning when the X-ray tube is about to emit X-rays. During the subsequent testing period, the audible alarm maintains a "chirping" signal throughout the duration of the test. If the pXRF is to be set up in a potentially high-traffic area (which is not recommended in the first place, but could be necessary), it is suggested to use this feature to help minimize exposure of bystanders.

Infra-Red Sensor

The pXRF has an infrared sensor that detects the presence of an object in front of the pXRF source. If no object is detected, the pXRF will not activate the source.

Radiation Safety Tips for Using the pXRF

All operators should follow minimum safety requirements discussed below. When handled properly, the amount of radiation exposure received from the pXRF will be negligible. However, the following safety tips are provided to help ensure safe and responsible use:

1. WARNING: No one but the operator should be allowed to be closer than 3 feet from the pXRF, particularly the beam port. Ignoring this warning could result in unnecessary exposure.
2. WARNING: The operator should never defeat the IR sensor in order to bypass this part of the safety circuit. Defeating this safety feature could result in over-exposure of the operator.
3. Do not allow anyone other than trained personnel to operate the pXRF.
4. Be aware of the direction that the X-rays travel when the red light is blinking and avoid placing any part of your body (e.g., eyes, hands) near the X-ray port to stabilize the instrument during operation.
5. Never hold a sample up to the X-ray port for analysis by hand; hold the instrument to the sample.
6. Establish a no-access zone at a sufficient distance from the instruments measurement window, which will allow air and distance to attenuate the beam.
7. Enclose the beam working area with protective panels (e.g., >3.0 mm stainless steel) if practical.
8. Wear an appropriate dosimeter (see the Laboratory Officer for more information on when a dosimeter is called for).
9. The operator is responsible for the security of the handheld XRF. When in use, the device should be in the operator's possession at all times (i.e., either in direct sight or a secure area).
10. Always store the instrument in a secure location when not in use.
11. During transport to and from the set up location, store the instrument in a cool, dry location.
12. WARNING: Pregnant women should not use the pXRF or work in proximity to it. See Additional Note, Pregnancy, above, for more information. Radiation exposure can be harmful to an embryo or developing fetus!

Credits

This document originated from Word document XRF_UG_v374.doc (see Archived Versions below for a pdf copy) that was written by N. Lawler and A. Armstrong. Credits for subsequent changes to this document are given in the page history.

Archived Versions

Olympus Delta pXRF User Guide - September 27, 2022

LMUG-pXRFUserGuide-230220-2004-190.pdf

XRF_UG_v374.pdf